5LUZ Hydrolase date Sep 12, 2016
title Structure Of Human Neurolysin (E475q) In Complex With Neurot Peptide Products
authors G.Masuyer, R.P.A.Berntsson, P.F.Teixeira, B.Kmiec, E.Glaser, P.S
compound source
Molecule: Neurolysin, Mitochondrial
Chain: A, B
Synonym: Angiotensin-Binding Protein,Microsomal Endopeptida Mitochondrial Oligopeptidase M,Neurotensin Endopeptidase;
Ec: 3.4.24.16
Engineered: Yes
Mutation: Yes
Other_details: Catalytically Impaired Human Neurolysin
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nln, Agtbp, Kiaa1226
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta 2
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet-15b

Molecule: Pro-Arg-Arg-Pro Neurotensin Fragment
Chain: C, D, P, Q
Engineered: Yes
Other_details: Neurotensin Product Of The Cleavage Reaction Neurolysin

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 43 21 2
R_factor 0.216 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.329 131.329 195.229 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand CL, GOL, ZN enzyme Hydrolase E.C.3.4.24.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMechanism of peptide binding and cleavage by the human mitochondrial peptidase neurolysin., Teixeira PF, Masuyer G, Pinho CM, Branca RMM, Kmiec B, Wallin C, Warmlander SKTS, Berntsson RP, Ankarcrona M, Graslund A, Lehtio J, Stenmark P, Glaser E, J Mol Biol. 2017 Nov 25. pii: S0022-2836(17)30561-2. doi:, 10.1016/j.jmb.2017.11.011. PMID:29183787
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (442 Kb) [Save to disk]
  • Biological Unit Coordinates (5luz.pdb1.gz) 218 Kb
  • Biological Unit Coordinates (5luz.pdb2.gz) 221 Kb
  • LPC: Ligand-Protein Contacts for 5LUZ
  • CSU: Contacts of Structural Units for 5LUZ
  • Structure Factors (3060 Kb)
  • Retrieve 5LUZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LUZ from S2C, [Save to disk]
  • View 5LUZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LUZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5luz_B] [5luz_C] [5luz_P] [5luz_Q] [5luz_D] [5luz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LUZ
  • Community annotation for 5LUZ at PDBWiki (http://pdbwiki.org)

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