5LXM Transferase date Sep 22, 2016
title Crystal Structure Of Aurora-A Bound To A Hydrocarbon-Stapled Proteomimetic Of Tpx2
authors P.J.Mcintyre, R.Bayliss
compound source
Molecule: Aurora Kinase A
Chain: A
Synonym: Aurora 2,Auroraipl1-Related Kinase 1,Hark1,Breast Amplified Kinase,Serinethreonine-Protein Kinase 15,Serine Protein Kinase 6,Serinethreonine-Protein Kinase Aurora-A;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aurka, Aik, Airk1, Ark1, Aura, Ayk1, Btak, Iak1, Stk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Targeting Protein For Xklp2
Chain: D
Synonym: Differentially Expressed In Cancerous And Non-Canc Cells 2,Dil-2,Hepatocellular Carcinoma-Associated Antigen 5 Hepatocellular Carcinoma-Associated Antigen 90,Protein Fls3 Restricted Expression Proliferation-Associated Protein 100,
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 31 2 1
R_factor 0.200 R_Free 0.243
length a length b length c angle alpha angle beta angle gamma
79.780 79.780 140.260 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.08 Å
ligand ADP, CL, MES, MG, MK8, NH3, P4G, PEG, PG4, SO4, TPO enzyme Transferase E.C. BRENDA

Primary referenceA TPX2 Proteomimetic Has Enhanced Affinity for Aurora-A Due to Hydrocarbon Stapling of a Helix., Rennie YK, McIntyre PJ, Akindele T, Bayliss R, Jamieson AG, ACS Chem Biol. 2016 Nov 1. PMID:27775325
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (5lxm.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 5LXM
  • CSU: Contacts of Structural Units for 5LXM
  • Structure Factors (661 Kb)
  • Retrieve 5LXM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LXM from S2C, [Save to disk]
  • Re-refined 5lxm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LXM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LXM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5lxm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lxm_A] [5lxm_D] [5lxm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5LXM: [S_TKc ] by SMART
  • Other resources with information on 5LXM
  • Community annotation for 5LXM at PDBWiki (http://pdbwiki.org)

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