5LXY Rna Binding Protein date Sep 23, 2016
title Structure Of The Minimal Rbm7 - Zcchc8 Complex
authors S.Falk, K.Finogenova, C.Benda, E.Conti
compound source
Molecule: Rna-Binding Protein 7
Chain: A, B, E, G, I, K, M
Synonym: Rna-Binding Motif Protein 7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbm7
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Zinc Finger Cchc Domain-Containing Protein 8
Chain: D, C, F, H, J, L, N
Synonym: Tramp-Like Complex Rna-Binding Factor Zcchc8
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zcchc8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.262 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
178.771 66.575 111.912 90.00 126.57 90.00
method X-Ray Diffractionresolution 2.85 Å
ligand BR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, M, K, I, G, E, B


Primary referenceStructure of the RBM7-ZCCHC8 core of the NEXT complex reveals connections to splicing factors., Falk S, Finogenova K, Melko M, Benda C, Lykke-Andersen S, Jensen TH, Conti E, Nat Commun. 2016 Dec 1;7:13573. doi: 10.1038/ncomms13573. PMID:27905398
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (5lxy.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (5lxy.pdb2.gz) 19 Kb
  • Biological Unit Coordinates (5lxy.pdb3.gz) 19 Kb
  • Biological Unit Coordinates (5lxy.pdb4.gz) 18 Kb
  • Biological Unit Coordinates (5lxy.pdb5.gz) 18 Kb
  • Biological Unit Coordinates (5lxy.pdb6.gz) 17 Kb
  • Biological Unit Coordinates (5lxy.pdb7.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 5LXY
  • CSU: Contacts of Structural Units for 5LXY
  • Structure Factors (187 Kb)
  • Retrieve 5LXY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LXY from S2C, [Save to disk]
  • Re-refined 5lxy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LXY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LXY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5lxy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lxy_F] [5lxy_E] [5lxy_C] [5lxy] [5lxy_D] [5lxy_N] [5lxy_I] [5lxy_M] [5lxy_G] [5lxy_K] [5lxy_A] [5lxy_B] [5lxy_L] [5lxy_J] [5lxy_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LXY
  • Community annotation for 5LXY at PDBWiki (http://pdbwiki.org)

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