5LY2 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 48V, CL, DTY, GOL, M3L, NI, OGA, ZN enzyme
Primary referenceHighly selective inhibition of histone demethylases by de novo macrocyclic peptides., Kawamura A, Munzel M, Kojima T, Yapp C, Bhushan B, Goto Y, Tumber A, Katoh T, King ON, Passioura T, Walport LJ, Hatch SB, Madden S, Muller S, Brennan PE, Chowdhury R, Hopkinson RJ, Suga H, Schofield CJ, Nat Commun. 2017 Apr 6;8:14773. doi: 10.1038/ncomms14773. PMID:28382930
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (252 Kb) [Save to disk]
  • Biological Unit Coordinates (5ly2.pdb1.gz) 243 Kb
  • LPC: Ligand-Protein Contacts for 5LY2
  • CSU: Contacts of Structural Units for 5LY2
  • Structure Factors (739 Kb)
  • Retrieve 5LY2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LY2 from S2C, [Save to disk]
  • Re-refined 5ly2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LY2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ly2] [5ly2_A] [5ly2_B] [5ly2_C] [5ly2_D] [5ly2_E] [5ly2_F] [5ly2_G] [5ly2_H]
  • SWISS-PROT database:

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science