5M5C Transport Protein date Oct 21, 2016
title Mechanism Of Microtubule Minus-End Recognition And Protectio Camsap Proteins
authors A.Akhmanova, C.A.Moores, M.Baldus, M.O.Steinmetz, M.Topf, A.J.Rob B.J.Grant, G.Scarabelli, A.P.Joseph, J.J.E.Van Hooff, K.Houben Y.Luo, M.M.Stangier, K.Jiang, J.Atherton
compound source
Molecule: Calmodulin-Regulated Spectrin-Associated Protein
Chain: C
Fragment: Unp Residues 1472-1589
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Camsap1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Tubulin Alpha Chain
Chain: D, A
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Tubulin Beta-2b Chain
Chain: E, B
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.80 Å
ligand GDP, GTP, MG, TA1 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D


C


E, B


Primary referenceA structural model for microtubule minus-end recognition and protection by CAMSAP proteins., Atherton J, Jiang K, Stangier MM, Luo Y, Hua S, Houben K, van Hooff JJE, Joseph AP, Scarabelli G, Grant BJ, Roberts AJ, Topf M, Steinmetz MO, Baldus M, Moores CA, Akhmanova A, Nat Struct Mol Biol. 2017 Oct 9. doi: 10.1038/nsmb.3483. PMID:28991265
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (273 Kb) [Save to disk]
  • Biological Unit Coordinates (5m5c.pdb1.gz) 266 Kb
  • LPC: Ligand-Protein Contacts for 5M5C
  • CSU: Contacts of Structural Units for 5M5C
  • Retrieve 5M5C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M5C from S2C, [Save to disk]
    • View 5M5C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5M5C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m5c_C] [5m5c_B] [5m5c_D] [5m5c_A] [5m5c_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5M5C
  • Community annotation for 5M5C at PDBWiki (http://pdbwiki.org)

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