5M8M Unknown Function date Oct 29, 2016
title Crystal Structure Of Human Tyrosinase Related Protein 1 In C With Kojic Acid
authors X.Lai, M.Soler-Lopez, H.J.Wichers, B.W.Dijkstra
compound source
Molecule: 5,6-Dihydroxyindole-2-Carboxylic Acid Oxidase
Chain: A, B, C, D
Synonym: Dhica Oxidase,Catalase B,Glycoprotein 75,Melanoma Gp75,Tyrosinase-Related Protein 1,Trp1;
Ec: 1.14.18.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tyrp1, Cas2, Tyrp, Tyrrp
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 21
R_factor 0.197 R_Free 0.249
length a length b length c angle alpha angle beta angle gamma
90.255 141.535 192.128 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.65 Å
enzyme Oxidoreductase E.C.1.14.18 BRENDA
A, D, C, B

Primary referenceStructure of Human Tyrosinase Related Protein 1 Reveals a Binuclear Zinc Active Site Important for Melanogenesis., Lai X, Wichers HJ, Soler-Lopez M, Dijkstra BW, Angew Chem Int Ed Engl. 2017 Aug 7;56(33):9812-9815. doi: 10.1002/anie.201704616., Epub 2017 Jul 17. PMID:28661582
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (307 Kb) [Save to disk]
  • Biological Unit Coordinates (5m8m.pdb1.gz) 77 Kb
  • Biological Unit Coordinates (5m8m.pdb2.gz) 77 Kb
  • Biological Unit Coordinates (5m8m.pdb3.gz) 79 Kb
  • Biological Unit Coordinates (5m8m.pdb4.gz) 78 Kb
  • CSU: Contacts of Structural Units for 5M8M
  • Structure Factors (1510 Kb)
  • Retrieve 5M8M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M8M from S2C, [Save to disk]
  • Re-refined 5m8m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5M8M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5M8M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5m8m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m8m_B] [5m8m_D] [5m8m_C] [5m8m_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5M8M
  • Community annotation for 5M8M at PDBWiki (http://pdbwiki.org)

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