5MF6	Hydrolase	date	Nov 17, 2016
title	Human Sirt6 In Complex With Activator Ubcs039
authors	C.Steegborn, W.You, C.Kambach
compound		source
Molecule: Nad-Dependent Protein Deacetylase Sirtuin-6 Chain: A, B Synonym: Regulatory Protein Sir2 Homolog 6,Sir2-Like Protei Ec: 3.5.1.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sirt6, Sir2l6 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_variant: Rosetta2 (De3) Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet151-D-Topo
symmetry	Space Group: P 63	R_factor 0.190 R_Free 0.220
crystal cell	length a length b length c angle alpha angle beta angle gamma 91.300 91.300 144.317 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.87 Å
ligand	7M2, AR6, EDO, PGE, SO4, ZN	enzyme	Hydrolase E.C.3.5.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural Basis of Sirtuin 6 Activation by Synthetic Small Molecules., You W, Rotili D, Li TM, Kambach C, Meleshin M, Schutkowski M, Chua KF, Mai A, Steegborn C, Angew Chem Int Ed Engl. 2016 Dec 19. doi: 10.1002/anie.201610082. PMID:27990725

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk] Biological Unit Coordinates (5mf6.pdb1.gz) 50 Kb Biological Unit Coordinates (5mf6.pdb2.gz) 48 Kb LPC: Ligand-Protein Contacts for 5MF6 CSU: Contacts of Structural Units for 5MF6 Structure Factors (2301 Kb) Retrieve 5MF6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5MF6 from S2C, [Save to disk] Re-refined 5mf6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5MF6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5MF6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5mf6_A] [5mf6] [5mf6_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5MF6

Community annotation for 5MF6 at PDBWiki (http://pdbwiki.org)

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