5MIO Motor Protein date Nov 28, 2016
title Kif2c-Darpin Fusion Protein Bound To Tubulin
authors W.Wang, B.Gigant
compound source
Molecule: Tubulin Alpha-1b Chain
Chain: A
Synonym: Alpha-Tubulin Ubiquitous,Tubulin K-Alpha-1,Tubulin Ubiquitous Chain;
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Tubulin Beta Chain
Chain: B

Organism_scientific: Ovis Aries
Organism_common: Sheep
Organism_taxid: 9940

Molecule: Kinesin-Like Protein Kif2c,Kif2c Fused To A Darpi Fused To A Darpin;
Chain: C
Synonym: Kinesin-Like Protein 6,Mitotic Centromere-Associat Kinesin,Mcak;
Engineered: Yes
Other_details: Neck + Motor Domain Of Kif2c Fused To The A-

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kif2c, Knsl6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.211 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.810 229.760 293.950 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.19 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • structural constituent of cy...


  • C


    Primary referenceInsight into microtubule disassembly by kinesin-13s from the structure of Kif2C bound to tubulin., Wang W, Cantos-Fernandes S, Lv Y, Kuerban H, Ahmad S, Wang C, Gigant B, Nat Commun. 2017 Jul 10;8(1):70. doi: 10.1038/s41467-017-00091-9. PMID:28694425
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (461 Kb) [Save to disk]
  • Biological Unit Coordinates (5mio.pdb1.gz) 151 Kb
  • Biological Unit Coordinates (5mio.pdb2.gz) 151 Kb
  • Biological Unit Coordinates (5mio.pdb3.gz) 162 Kb
  • CSU: Contacts of Structural Units for 5MIO
  • Structure Factors (310 Kb)
  • Retrieve 5MIO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MIO from S2C, [Save to disk]
  • Re-refined 5mio structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MIO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MIO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5mio from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mio_C] [5mio_B] [5mio_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MIO
  • Community annotation for 5MIO at PDBWiki (http://pdbwiki.org)

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