5MIX	Immune System	date	Nov 29, 2016
title	Extracellular Domain Of Human Cd83 - Trigonal Crystal Form
authors	S.Klingl, C.Egerer-Sieber, B.Schmid, Y.A.Muller
compound		source
Molecule: Cd83 Antigen Chain: A Synonym: Hcd83,B-Cell Activation Protein,Cell Surface Prote Engineered: Yes Mutation: Yes Other_details: The First Four Residues (Gspg) Are Non-Nativ Of The Linker Which Remains After The Gst-Tag Was Cleaved O First Three And Last Four Residues As Well As The Central R Not Visible In The Electron Density Maps.		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell: Dendritic Cells Gene: Cd83 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Gold Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-2t
symmetry	Space Group: P 3 2 1	R_factor 0.188 R_Free 0.216
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.942 62.942 40.064 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.70 Å
Primary reference	Crystal structure of the extracellular domain of the human dendritic cell surface marker CD83., Heilingloh CS, Klingl S, Egerer-Sieber C, Schmid B, Weiler S, Muhl-Zurbes P, Hofmann J, Stump JD, Sticht H, Kummer M, Steinkasserer A, Muller YA, J Mol Biol. 2017 Mar 14. pii: S0022-2836(17)30113-4. doi:, 10.1016/j.jmb.2017.03.009. PMID:28315353

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk] Biological Unit Coordinates (5mix.pdb1.gz) 29 Kb CSU: Contacts of Structural Units for 5MIX Structure Factors (68 Kb) Retrieve 5MIX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5MIX from S2C, [Save to disk] Re-refined 5mix structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5MIX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5MIX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5mix_A] [5mix] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5MIX

Community annotation for 5MIX at PDBWiki (http://pdbwiki.org)

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