5MNI Transferase date Dec 13, 2016
title Escherichia Coli Agpase Mutant R130a Apo Form
authors J.O.Cifuente, N.Comino, A.Marina, A.Orrantia, A.Eguskiza, M.E.Gue
compound source
Molecule: Glucose-1-Phosphate Adenylyltransferase
Chain: E, G, H, F, A, B, D, C
Synonym: Adp-Glucose Pyrophosphorylase,Adpglc Ppase,Adp-Glu Synthase;
Ec: 2.7.7.27
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
Gene: Glgc, B3430, Jw3393
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.235 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.224 147.603 125.572 90.00 91.52 90.00
method X-Ray Diffractionresolution 3.09 Å
ligand
enzyme Transferase E.C.2.7.7.27 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceMechanistic insights into the allosteric regulation of bacterial ADP-glucose pyrophosphorylases., Comino N, Cifuente J, Marina A, Orrantia A, Eguskiza A, Guerin ME, J Biol Chem. 2017 Feb 21. pii: jbc.M116.773408. doi: 10.1074/jbc.M116.773408. PMID:28223362
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1446 Kb) [Save to disk]
  • Biological Unit Coordinates (5mni.pdb1.gz) 728 Kb
  • Biological Unit Coordinates (5mni.pdb2.gz) 715 Kb
  • CSU: Contacts of Structural Units for 5MNI
  • Structure Factors (537 Kb)
  • Retrieve 5MNI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MNI from S2C, [Save to disk]
  • Re-refined 5mni structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MNI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MNI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5mni from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mni_A] [5mni] [5mni_E] [5mni_B] [5mni_G] [5mni_D] [5mni_F] [5mni_H] [5mni_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MNI
  • Community annotation for 5MNI at PDBWiki (http://pdbwiki.org)

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