5N03 Lyase date Feb 02, 2017
title Crystal Structure Of The Decarboxylase Aibaaibb C56v Varian
authors T.Bock, E.Luxenburger, J.Hoffmann, V.Schuetza, C.Feiler, R.Muelle W.Blankenfeldt
compound source
Molecule: Glutaconate Coa-Transferase Family, Subunit A
Chain: A, C
Engineered: Yes
Mutation: Yes
Organism_scientific: Myxococcus Xanthus (Strain Dk 1622)
Organism_taxid: 246197
Strain: Dk 1622
Gene: Mxan_4264
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Glutaconate Coa-Transferase Family, Subunit B
Chain: D, B
Engineered: Yes
Mutation: Yes

Organism_scientific: Myxococcus Xanthus (Strain Dk 1622)
Organism_taxid: 246197
Strain: Dk 1622
Gene: Mxan_4265
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.166 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.999 93.246 91.061 90.00 104.41 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand ACT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceAibA/AibB Induces an Intramolecular Decarboxylation in Isovalerate Biosynthesis by Myxococcus xanthus., Bock T, Luxenburger E, Hoffmann J, Schutza V, Feiler C, Muller R, Blankenfeldt W, Angew Chem Int Ed Engl. 2017 Aug 7;56(33):9986-9989. doi: 10.1002/anie.201701992., Epub 2017 May 16. PMID:28508504
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (175 Kb) [Save to disk]
  • Biological Unit Coordinates (5n03.pdb1.gz) 170 Kb
  • LPC: Ligand-Protein Contacts for 5N03
  • CSU: Contacts of Structural Units for 5N03
  • Structure Factors (677 Kb)
  • Retrieve 5N03 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5N03 from S2C, [Save to disk]
  • Re-refined 5n03 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5N03 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5N03
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5n03_B] [5n03_A] [5n03_C] [5n03_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5N03
  • Community annotation for 5N03 at PDBWiki (http://pdbwiki.org)

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