5N85 Protein Binding date Feb 23, 2017
title Structure Of Rpa70n In Complex With Primpol (Fragment 514-52
authors N.C.Brissett, A.J.Doherty
compound source
Molecule: Replication Protein A 70 Kda Dna-Binding Subunit
Chain: A
Synonym: Rp-A P70,Replication Factor A Protein 1,Rf-A Prote Single-Stranded Dna-Binding Protein;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rpa1, Repa1, Rpa70
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet15b

Molecule: Dna-Directed Primasepolymerase Protein
Chain: B
Fragment: Unp Residues 514-528
Synonym: Hprimpol1,Coiled-Coil Domain-Containing Protein 11
Ec: 2.7.7.-
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.187 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.860 53.090 54.630 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Transferase E.C.2.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular basis for PrimPol recruitment to replication forks by RPA., Guilliam TA, Brissett NC, Ehlinger A, Keen BA, Kolesar P, Taylor EM, Bailey LJ, Lindsay HD, Chazin WJ, Doherty AJ, Nat Commun. 2017 May 23;8:15222. doi: 10.1038/ncomms15222. PMID:28534480
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (5n85.pdb1.gz) 47 Kb
  • CSU: Contacts of Structural Units for 5N85
  • Structure Factors (351 Kb)
  • Retrieve 5N85 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5N85 from S2C, [Save to disk]
  • Re-refined 5n85 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5N85 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5N85
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5n85 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5n85_B] [5n85_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5N85
  • Community annotation for 5N85 at PDBWiki (http://pdbwiki.org)

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