5N9G Transcription date Feb 24, 2017
title Tfiiib -Tbpbrf2dna And Sant Domain Of Bdp1-
authors J.Gouge, A.Vannini, N.Guthertz
compound source
Molecule: Transcription Factor Iiib 50 Kda Subunit
Chain: A, F
Synonym: Htfiiib50,B-Related Factor 2,Brf-2,Hbrfu
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brf2, Brfu, Pro1470
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Tata-Box-Binding Protein
Chain: B, G
Fragment: Unp Residues 159-339
Synonym: Tata Sequence-Binding Protein,Tata-Binding Factor, Factor,Transcription Initiation Factor Tfiid Tbp Subunit;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tbp, Gtf2d1, Tf2d, Tfiid
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Transcription Factor Tfiiib Component B'' Homolog
Chain: C, H
Fragment: Unp Residues 241-396
Synonym: Transcription Factor Iiib 150,Tfiiib150,Transcript Factor-Like Nuclear Regulator;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bdp1, Kiaa1241, Kiaa1689, Tfnr
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dnarna (27-Mer)
Chain: D, I
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Based On U6-2 Promoter

Molecule: Dnarna (25-Mer)
Chain: E, J
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.194 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.190 124.080 88.610 90.00 99.51 90.00
method X-Ray Diffractionresolution 2.70 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A


G, B


H, C


Primary referenceMolecular mechanisms of Bdp1 in TFIIIB assembly and RNA polymerase III transcription initiation., Gouge J, Guthertz N, Kramm K, Dergai O, Abascal-Palacios G, Satia K, Cousin P, Hernandez N, Grohmann D, Vannini A, Nat Commun. 2017 Jul 25;8(1):130. doi: 10.1038/s41467-017-00126-1. PMID:28743884
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (505 Kb) [Save to disk]
  • Biological Unit Coordinates (5n9g.pdb1.gz) 250 Kb
  • Biological Unit Coordinates (5n9g.pdb2.gz) 245 Kb
  • CSU: Contacts of Structural Units for 5N9G
  • Structure Factors (2946 Kb)
  • Retrieve 5N9G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5N9G from S2C, [Save to disk]
  • Re-refined 5n9g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5N9G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5N9G
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5n9g from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5n9g_A] [5n9g_C] [5n9g_J] [5n9g_I] [5n9g_D] [5n9g_F] [5n9g_B] [5n9g_H] [5n9g_G] [5n9g_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5N9G
  • Community annotation for 5N9G at PDBWiki (http://pdbwiki.org)

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