5NCJ Oxidoreductase date Mar 05, 2017
title Grie In Complex With Manganese, Succinate And (2s,4r)-5-Hydr
authors P.Lukat, W.Blankenfeldt, R.Mueller
compound source
Molecule: Leucine Hydroxylase
Chain: A, B
Engineered: Yes
Other_details: The N-Terminal Strep-Tag II Was Removed By T Cleavage. The Construct Is A C-Terminally Truncated Grie (1
 Organism_scientific: Streptomyces Sp. Dsm 40835
Organism_taxid: 1637813
Gene: Grie
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
symmetry Space Group: C 1 2 1
R_factor 0.155 R_Free 0.173
crystal
cell
length a length b length c angle alpha angle beta angle gamma
148.740 56.061 73.802 90.00 112.46 90.00
method X-Ray Diffractionresolution 1.53 Å
ligand HL5, MN, SIN enzyme
Primary referenceBiosynthesis of methyl-proline containing griselimycins, natural products with anti-tuberculosis activity., Lukat P, Katsuyama Y, Wenzel S, Binz T, Konig C, Blankenfeldt W, Bronstrup M, Muller R, Chem Sci. 2017 Nov 1;8(11):7521-7527. doi: 10.1039/c7sc02622f. Epub 2017 Aug 3. PMID:29163906
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (269 Kb) [Save to disk]
  • Biological Unit Coordinates (5ncj.pdb1.gz) 131 Kb
  • Biological Unit Coordinates (5ncj.pdb2.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 5NCJ
  • CSU: Contacts of Structural Units for 5NCJ
  • Structure Factors (2259 Kb)
  • Retrieve 5NCJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NCJ from S2C, [Save to disk]
    • View 5NCJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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    • Visual 3D analysis of 5NCJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ncj_A] [5ncj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5NCJ
  • Community annotation for 5NCJ at PDBWiki (http://pdbwiki.org)

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