5NFF Viral Protein date Mar 14, 2017
title Crystal Structure Of Gp1 Receptor Binding Domain From Morogo
authors H.Israeli, H.Cohen-Dvashi, A.Shulman, A.Shimon, R.Diskin
compound source
Molecule: Glycoprotein
Chain: B, A, C, D, E, F, G, H, I, J, K, L, M, N, O, P
Engineered: Yes
 Organism_scientific: Morogoro Virus
Organism_taxid: 573900
Gene: Gpc
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
symmetry Space Group: P 32
R_factor 0.174 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.769 127.769 251.704 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.62 Å
ligand CIT, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, N, K, E, M, C, L, A, J, O, P, B, H, D, I, G


Primary referenceMapping of the Lassa virus LAMP1 binding site reveals unique determinants not shared by other old world arenaviruses., Israeli H, Cohen-Dvashi H, Shulman A, Shimon A, Diskin R, PLoS Pathog. 2017 Apr 27;13(4):e1006337. doi: 10.1371/journal.ppat.1006337., eCollection 2017 Apr. PMID:28448640
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (846 Kb) [Save to disk]
  • Biological Unit Coordinates (5nff.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (5nff.pdb2.gz) 56 Kb
  • Biological Unit Coordinates (5nff.pdb3.gz) 56 Kb
  • Biological Unit Coordinates (5nff.pdb4.gz) 56 Kb
  • Biological Unit Coordinates (5nff.pdb5.gz) 56 Kb
  • Biological Unit Coordinates (5nff.pdb6.gz) 56 Kb
  • Biological Unit Coordinates (5nff.pdb7.gz) 57 Kb
  • Biological Unit Coordinates (5nff.pdb8.gz) 57 Kb
  • Biological Unit Coordinates (5nff.pdb9.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 5NFF
  • CSU: Contacts of Structural Units for 5NFF
  • Structure Factors (3045 Kb)
  • Retrieve 5NFF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NFF from S2C, [Save to disk]
  • Re-refined 5nff structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5NFF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5NFF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nff_P] [5nff_F] [5nff_L] [5nff_M] [5nff_G] [5nff_A] [5nff] [5nff_J] [5nff_I] [5nff_B] [5nff_C] [5nff_D] [5nff_O] [5nff_K] [5nff_H] [5nff_E] [5nff_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5NFF
  • Community annotation for 5NFF at PDBWiki (http://pdbwiki.org)

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