5NFN Oxidoreductase date Mar 14, 2017
title Jmjd7 In Complex With Mn And 2og In The H32 Form
authors R.Chowdhury, S.Markolovic, C.J.Schofield
compound source
Molecule: Jmjc Domain-Containing Protein 7
Chain: A, B, C, D
Synonym: Jumonji Domain-Containing Protein 7
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Jmjd7
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a(+)
symmetry Space Group: H 3 2
R_factor 0.249 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
207.220 207.220 211.788 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.98 Å
ligand AKG, GOL, MN, NO3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (217 Kb) [Save to disk]
  • Biological Unit Coordinates (5nfn.pdb1.gz) 109 Kb
  • Biological Unit Coordinates (5nfn.pdb2.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 5NFN
  • CSU: Contacts of Structural Units for 5NFN
  • Structure Factors (446 Kb)
  • Retrieve 5NFN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NFN from S2C, [Save to disk]
    • View 5NFN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5NFN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nfn_B] [5nfn_C] [5nfn_D] [5nfn_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5NFN
  • Community annotation for 5NFN at PDBWiki (http://pdbwiki.org)

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