5NFQ Hydrolase date Mar 15, 2017
title Novel Epoxide Hydrolases Belonging To The Alphabeta Hydrola Superfamily In Metagenomes From Hot Environments
authors E.E.Ferrandi, S.A.De Rose, C.Sayer, E.Guazzelli, C.Marchesi, V.Sa M.N.Isupov, J.A.Littlechild, D.Monti
compound source
Molecule: Epoxide Hydrolase Belonging To Alphabeta Hydrola Superfamily Metagenomic From Tomsk Sample;
Chain: A
Ec: 3.3.2.10
Engineered: Yes
 Organism_scientific: Metagenome
Organism_taxid: 256318
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.162 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.200 84.180 157.450 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand EDO, IMD, PEG, PGE enzyme Hydrolase E.C.3.3.2.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNew Thermophilic alpha/beta Class Epoxide Hydrolases Found in Metagenomes From Hot Environments., Ferrandi EE, Sayer C, De Rose SA, Guazzelli E, Marchesi C, Saneei V, Isupov MN, Littlechild JA, Monti D, Front Bioeng Biotechnol. 2018 Oct 16;6:144. doi: 10.3389/fbioe.2018.00144., eCollection 2018. PMID:30386778
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (5nfq.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 5NFQ
  • CSU: Contacts of Structural Units for 5NFQ
  • Structure Factors (552 Kb)
  • Retrieve 5NFQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NFQ from S2C, [Save to disk]
    • View 5NFQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5NFQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nfq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5NFQ
  • Community annotation for 5NFQ at PDBWiki (http://pdbwiki.org)

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