5NJK	Endocytosis	date	Mar 29, 2017
title	Ptb Domain Of Human Numb Isoform-1
authors	M.Mapelli, P.P.Di Fiore
compound		source
Molecule: Protein Numb Homolog Chain: A, B, C, D, E, F Synonym: H-Numb,Protein S171 Engineered: Yes Other_details: Ptb Domain		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Numb Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693
Molecule: Ala-Tyr-Ile-Gly-Pro-Ptr-Leu Chain: H, G, I, J, K, M Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.230 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 75.270 81.870 235.680 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.13 Å
ligand	PTR, SO4	enzyme
Primary reference	A Numb-Mdm2 fuzzy complex reveals an isoform-specific involvement of Numb in breast cancer., Colaluca IN, Basile A, Freiburger L, D'Uva V, Disalvatore D, Vecchi M, Confalonieri S, Tosoni D, Cecatiello V, Malabarba MG, Yang CJ, Kainosho M, Sattler M, Mapelli M, Pece S, Di Fiore PP, J Cell Biol. 2017 Dec 21. pii: jcb.201709092. doi: 10.1083/jcb.201709092. PMID:29269425

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (290 Kb) [Save to disk] Biological Unit Coordinates (5njk.pdb1.gz) 51 Kb Biological Unit Coordinates (5njk.pdb2.gz) 52 Kb Biological Unit Coordinates (5njk.pdb3.gz) 48 Kb Biological Unit Coordinates (5njk.pdb4.gz) 48 Kb Biological Unit Coordinates (5njk.pdb5.gz) 48 Kb Biological Unit Coordinates (5njk.pdb6.gz) 50 Kb LPC: Ligand-Protein Contacts for 5NJK CSU: Contacts of Structural Units for 5NJK Structure Factors (384 Kb) Retrieve 5NJK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5NJK from S2C, [Save to disk]

View 5NJK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5NJK

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5njk_G] [5njk_D] [5njk_K] [5njk_C] [5njk_J] [5njk_H] [5njk_A] [5njk_F] [5njk_M] [5njk_I] [5njk_E] [5njk_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5NJK at PDBWiki (http://pdbwiki.org)

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