5NLV	Hydrolase	date	Apr 05, 2017
title	Brag2 Sec7-Ph (390-763)
authors	A.Nawrotek, J.Cherfils
compound		source
Molecule: Iq Motif And Sec7 Domain-Containing Protein 1 Chain: A Synonym: Adp-Ribosylation Factors Guanine Nucleotide-Exchan 100,Adp-Ribosylation Factors Guanine Nucleotide-Exchange Pr Brefeldin-Resistant Arf-Gef 2 Protein,Brag2; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Iqsec1, Arfgep100, Brag2, Kiaa0763 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.240 R_Free 0.259
crystal cell	length a length b length c angle alpha angle beta angle gamma 114.434 57.556 75.262 90.00 97.70 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	CME	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Multiple interactions between an Arf/GEF complex and charged lipids determine activation kinetics on the membrane., Karandur D, Nawrotek A, Kuriyan J, Cherfils J, Proc Natl Acad Sci U S A. 2017 Sep 18. pii: 201707970. doi:, 10.1073/pnas.1707970114. PMID:28923919

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk] Biological Unit Coordinates (5nlv.pdb1.gz) 120 Kb LPC: Ligand-Protein Contacts for 5NLV CSU: Contacts of Structural Units for 5NLV Structure Factors (631 Kb) Retrieve 5NLV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5NLV from S2C, [Save to disk]

View 5NLV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5NLV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5nlv_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5NLV

Community annotation for 5NLV at PDBWiki (http://pdbwiki.org)

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