5NPV Cell Cycle date Apr 19, 2017
title Structure Of Human Atg5-Atg16l1(Atg5bd) Complex (I4)
authors A.Archna, A.Scrima
compound source
Molecule: Autophagy Protein 5
Chain: A, C
Synonym: Apg5-Like,Apoptosis-Specific Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atg5, Apg5l, Asp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet15b-Derived

Molecule: Autophagy-Related Protein 16-1
Chain: B, D
Synonym: Apg16-Like 1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atg16l1, Apg16l, Unq9393pro34307
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pcola-Derived
symmetry Space Group: I 4
R_factor 0.253 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
143.580 143.580 62.320 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceIdentification, biochemical characterization and crystallization of the central region of human ATG16L1., Archna A, Scrima A, Acta Crystallogr F Struct Biol Commun. 2017 Oct 1;73(Pt 10):560-567. doi:, 10.1107/S2053230X17013280. Epub 2017 Sep 28. PMID:28994404
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (284 Kb) [Save to disk]
  • Biological Unit Coordinates (5npv.pdb1.gz) 142 Kb
  • Biological Unit Coordinates (5npv.pdb2.gz) 134 Kb
  • CSU: Contacts of Structural Units for 5NPV
  • Structure Factors (102 Kb)
  • Retrieve 5NPV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NPV from S2C, [Save to disk]
  • View 5NPV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NPV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5npv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5npv_D] [5npv_A] [5npv_C] [5npv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NPV
  • Community annotation for 5NPV at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science