5NXD Transferase date May 10, 2017
title Lim Domain Kinase 2 (Limk2) In Complex With Th-300
authors S.Mathea, E.Salah, T.Hanke, J.A.Newman, S.Oerum, D.Wang, N.Burgess F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, A.N.Bulloc
compound source
Molecule: Lim Domain Kinase 2
Chain: A, B
Fragment: Unp Residues 330-632
Synonym: Limk-2
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Limk2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 1 21 1
R_factor 0.195 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.275 66.605 82.124 90.00 97.43 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 9D8, EDO enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (5nxd.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (5nxd.pdb2.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 5NXD
  • CSU: Contacts of Structural Units for 5NXD
  • Structure Factors (1457 Kb)
  • Retrieve 5NXD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NXD from S2C, [Save to disk]
  • Re-refined 5nxd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5NXD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NXD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nxd_B] [5nxd_A] [5nxd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NXD
  • Community annotation for 5NXD at PDBWiki (http://pdbwiki.org)

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