5O6T	Ligase	date	Jun 07, 2017
title	Birc4 Ring In Complex With Dimeric Ubiquitin Variant
authors	M.Gabrielsen, L.Buetow, D.T.Huang
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Xiap Chain: A, B Synonym: Baculoviral Iap Repeat-Containing Protein 4,Iap-Li Protein,Hilp,Inhibitor Of Apoptosis Protein 3,Hiap3,Ring-Ty Ubiquitin Transferase Xiap,X-Linked Inhibitor Of Apoptosis Linked Iap; Ec: 2.3.2.27 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Xiap, Api3, Birc4, Iap3 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex4t.1
Molecule: Polyubiquitin-B Chain: C, D Engineered: Yes Other_details: A Variant Of Ubiquitin Identified From A Pha Library		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubb Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008
symmetry	Space Group: P 21 21 21	R_factor 0.156 R_Free 0.183
crystal cell	length a length b length c angle alpha angle beta angle gamma 35.715 69.972 109.747 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.57 Å
ligand	EDO, ZN	enzyme	Transferase E.C.2.3.2.27 BRENDA
Primary reference	A General Strategy for Discovery of Inhibitors and Activators of RING and U-box E3 Ligases with Ubiquitin Variants., Gabrielsen M, Buetow L, Nakasone MA, Ahmed SF, Sibbet GJ, Smith BO, Zhang W, Sidhu SS, Huang DT, Mol Cell. 2017 Oct 19;68(2):456-470.e10. doi: 10.1016/j.molcel.2017.09.027. PMID:29053960

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk] Biological Unit Coordinates (5o6t.pdb1.gz) 91 Kb Biological Unit Coordinates (5o6t.pdb2.gz) 107 Kb LPC: Ligand-Protein Contacts for 5O6T CSU: Contacts of Structural Units for 5O6T Structure Factors (1540 Kb) Retrieve 5O6T in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5O6T from S2C, [Save to disk]

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Visual 3D analysis of 5O6T

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5o6t_D] [5o6t_C] [5o6t_B] [5o6t_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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