5O71 Hydrolase date Jun 07, 2017
title Crystal Structure Of Human Usp25
authors D.Reverter, B.Liu
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 25
Chain: A
Synonym: Deubiquitinating Enzyme 25,Usp On Chromosome 21,Ub Thioesterase 25,Ubiquitin-Specific-Processing Protease 25;
Ec: 3.4.19.12
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Usp25, Usp21
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4 2 2
R_factor 0.202 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
140.806 140.806 190.156 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.28 Å
ligand
enzyme Hydrolase E.C.3.4.19.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA quaternary tetramer assembly inhibits the deubiquitinating activity of USP25., Liu B, Sureda-Gomez M, Zhen Y, Amador V, Reverter D, Nat Commun. 2018 Nov 26;9(1):4973. doi: 10.1038/s41467-018-07510-5. PMID:30478318
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (5o71.pdb1.gz) 322 Kb
  • CSU: Contacts of Structural Units for 5O71
  • Structure Factors (636 Kb)
  • Retrieve 5O71 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O71 from S2C, [Save to disk]
    • View 5O71 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5O71
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o71_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5O71
  • Community annotation for 5O71 at PDBWiki (http://pdbwiki.org)

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