5O9H Membrane Protein date Jun 19, 2017
title Crystal Structure Of Thermostabilised Human C5a Anaphylatoxi Chemotactic Receptor 1 (C5ar) In Complex With Ndt9513727
authors N.Robertson, M.Rappas, A.S.Dore, J.Brown, G.Bottegoni, M.Koglin, J.Cansfield, A.Jazayeri, R.M.Cooke, F.H.Marshall
compound source
Molecule: C5a Anaphylatoxin Chemotactic Receptor 1
Chain: A, B
Synonym: C5a Anaphylatoxin Chemotactic Receptor,C5ar
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: C5ar1, C5ar, C5r1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.093 51.096 118.936 90.00 106.73 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 9P2, CIT, OLA, TLA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the complement C5a receptor bound to the extra-helical antagonist NDT9513727., Robertson N, Rappas M, Dore AS, Brown J, Bottegoni G, Koglin M, Cansfield J, Jazayeri A, Cooke RM, Marshall FH, Nature. 2018 Jan 3;553(7686):111-114. doi: 10.1038/nature25025. PMID:29300009
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (212 Kb) [Save to disk]
  • Biological Unit Coordinates (5o9h.pdb1.gz) 201 Kb
  • LPC: Ligand-Protein Contacts for 5O9H
  • CSU: Contacts of Structural Units for 5O9H
  • Structure Factors (271 Kb)
  • Retrieve 5O9H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O9H from S2C, [Save to disk]
  • View 5O9H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5O9H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o9h_A] [5o9h_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5O9H
  • Community annotation for 5O9H at PDBWiki (http://pdbwiki.org)

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