5OAF Gene Regulation date Jun 21, 2017
title Human Rvb1rvb2 Heterohexamer In Ino80 Complex
authors R.J.Aramayo, R.Bythell-Douglas, R.Ayala, O.Willhoft, D.Wigley, X.
compound source
Molecule: Ruvb-Like 1
Chain: A, C, E
Synonym: 49 Kda Tata Box-Binding Protein-Interacting Protei Tbp-Interacting Protein,54 Kda Erythrocyte Cytosolic Protei Ino80 Complex Subunit H,Nuclear Matrix Protein 238,Nmp 238, Tip49a,Tip60-Associated Protein 54-Alpha,Tap54-Alpha;
Ec: 3.6.4.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ruvbl1, Ino80h, Nmp238, Tip49, Tip49a
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9

Molecule: Ruvb-Like 2
Chain: B, D, F
Synonym: 48 Kda Tata Box-Binding Protein-Interacting Protei Tbp-Interacting Protein,51 Kda Erythrocyte Cytosolic Protei Ino80 Complex Subunit J,Repressing Pontin 52,Reptin 52,Tip4 Associated Protein 54-Beta,Tap54-Beta;
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ruvbl2, Ino80j, Tip48, Tip49b, Cgi-46
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.06 Å
ligand
enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, E
  • DNA helicase activity
  • transcription coactivator ac...
  • 5'-3' DNA helicase activity


  • F, D, B
  • DNA helicase activity
  • transcription corepressor ac...
  • 5'-3' DNA helicase activity


  • Primary referenceCryo-EM structures of the human INO80 chromatin-remodeling complex., Aramayo RJ, Willhoft O, Ayala R, Bythell-Douglas R, Wigley DB, Zhang X, Nat Struct Mol Biol. 2018 Jan;25(1):37-44. doi: 10.1038/s41594-017-0003-7. Epub, 2017 Dec 4. PMID:29323271
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (379 Kb) [Save to disk]
  • Biological Unit Coordinates (5oaf.pdb1.gz) 373 Kb
  • CSU: Contacts of Structural Units for 5OAF
  • Retrieve 5OAF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OAF from S2C, [Save to disk]
  • View 5OAF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OAF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5oaf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5oaf_E] [5oaf_B] [5oaf_F] [5oaf_A] [5oaf_D] [5oaf_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OAF
  • Community annotation for 5OAF at PDBWiki (http://pdbwiki.org)

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