5OC7 Signaling Protein date Jun 29, 2017
title Crystal Structure Of The Pleckstrin-Homology Domain Of Bcr-A Complex With Monobody Mb(Bcr-Ph_4).
authors S.Reckel, A.Reynaud, F.Pojer, O.Hantschel
compound source
Molecule: Breakpoint Cluster Region Protein,Pleckstrin-Homo Domain Of Bcr-Abl;
Chain: D, A
Synonym: Renal Carcinoma Antigen Ny-Ren-26
Ec: 2.7.11.1,2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bcr, Bcr1, D22s11
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Monobody Mb(Bcr-Ph_4)
Chain: C, B
Engineered: Yes

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1
R_factor 0.174 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
29.683 62.606 67.378 62.74 84.77 89.29
method X-Ray Diffractionresolution 1.65 Å
ligand
enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D


Primary referenceStructural and functional dissection of the DH and PH domains of oncogenic Bcr-Abl tyrosine kinase., Reckel S, Gehin C, Tardivon D, Georgeon S, Kukenshoner T, Lohr F, Koide A, Buchner L, Panjkovich A, Reynaud A, Pinho S, Gerig B, Svergun D, Pojer F, Guntert P, Dotsch V, Koide S, Gavin AC, Hantschel O, Nat Commun. 2017 Dec 13;8(1):2101. doi: 10.1038/s41467-017-02313-6. PMID:29235475
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (5oc7.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (5oc7.pdb2.gz) 43 Kb
  • Biological Unit Coordinates (5oc7.pdb3.gz) 138 Kb
  • Biological Unit Coordinates (5oc7.pdb4.gz) 30 Kb
  • CSU: Contacts of Structural Units for 5OC7
  • Structure Factors (1279 Kb)
  • Retrieve 5OC7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OC7 from S2C, [Save to disk]
  • View 5OC7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OC7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5oc7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5oc7_C] [5oc7_B] [5oc7_D] [5oc7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OC7
  • Community annotation for 5OC7 at PDBWiki (http://pdbwiki.org)

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