5OJJ	Ligase	date	Jul 21, 2017
title	Crystal Structure Of The Zn-Bound Ubiquitin-Conjugating Enzy
authors	F.E.Morreale, A.Testa, V.K.Chaugule, A.Bortoluzzi, A.Ciulli, H.Wa
compound		source
Molecule: Ubiquitin-Conjugating Enzyme E2 T Chain: A, B, C, D, E, F Synonym: Cell Proliferation-Inducing Gene 50 Protein,E2 Ubi Conjugating Enzyme T,Ubiquitin Carrier Protein T,Ubiquitin- Ligase T; Ec: 2.3.2.23 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ube2t, Hspc150, Pig50 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693
symmetry	Space Group: P 1 21 1	R_factor 0.178 R_Free 0.199
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.020 96.383 89.996 90.00 93.28 90.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	ACT, TRS, ZN	enzyme	Transferase E.C.2.3.2.23 BRENDA
Primary reference	Mind the Metal: A Fragment Library-Derived Zinc Impurity Binds the E2 Ubiquitin-Conjugating Enzyme Ube2T and Induces Structural Rearrangements., Morreale FE, Testa A, Chaugule VK, Bortoluzzi A, Ciulli A, Walden H, J Med Chem. 2017 Oct 3. doi: 10.1021/acs.jmedchem.7b01071. PMID:28933844

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk] Biological Unit Coordinates (5ojj.pdb1.gz) 83 Kb Biological Unit Coordinates (5ojj.pdb2.gz) 84 Kb LPC: Ligand-Protein Contacts for 5OJJ CSU: Contacts of Structural Units for 5OJJ Structure Factors (3051 Kb) Retrieve 5OJJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5OJJ from S2C, [Save to disk]

View 5OJJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5OJJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ojj_F] [5ojj_E] [5ojj_C] [5ojj_B] [5ojj_D] [5ojj_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5OJJ

Community annotation for 5OJJ at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---