5OJK Cell Adhesion date Jul 21, 2017
title Crystal Structure Of The Human Neuroligin 1 Cholinesterase D Containing Spliced Sequence B (Ssb) (Nl1(-A+B))
authors J.Elegheert, A.R.Aricescu
compound source
Molecule: Neuroligin-1,Neuroligin-1
Chain: A, B
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nlgn1, Kiaa1070
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s Gnti--
Expression_system_plasmid: Phlsec
symmetry Space Group: P 2 21 21
R_factor 0.236 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.570 118.050 214.340 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand NAG, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Mechanism for Modulation of Synaptic Neuroligin-Neurexin Signaling by MDGA Proteins., Elegheert J, Cvetkovska V, Clayton AJ, Heroven C, Vennekens KM, Smukowski SN, Regan MC, Jia W, Smith AC, Furukawa H, Savas JN, de Wit J, Begbie J, Craig AM, Aricescu AR, Neuron. 2017 Aug 16;95(4):896-913.e10. doi: 10.1016/j.neuron.2017.07.040. PMID:28817804
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk]
  • Biological Unit Coordinates (5ojk.pdb1.gz) 170 Kb
  • LPC: Ligand-Protein Contacts for 5OJK
  • CSU: Contacts of Structural Units for 5OJK
  • Structure Factors (370 Kb)
  • Retrieve 5OJK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OJK from S2C, [Save to disk]
    • View 5OJK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5OJK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ojk_B] [5ojk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5OJK
  • Community annotation for 5OJK at PDBWiki (http://pdbwiki.org)

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