5OKM	Hydrolase	date	Jul 25, 2017
title	Crystal Structure Of Human Ship2 Phosphatase-C2
authors	J.Le Coq, D.Lietha
compound		source
Molecule: Phosphatidylinositol 3,4,5-Trisphosphate 5-Phosph Chain: A, B, C, D, E, F, G, H Synonym: Inositol Polyphosphate Phosphatase-Like Protein 1, Protein 51c,Sh2 Domain-Containing Inositol 5'-Phosphatase 2 Ec: 3.1.3.86 Engineered: Yes Other_details: The Two First Residues Are From The Expressi		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Inppl1, Ship2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta2(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Popinj
symmetry	Space Group: P 21 21 21	R_factor 0.180 R_Free 0.208
crystal cell	length a length b length c angle alpha angle beta angle gamma 136.037 175.836 176.893 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.96 Å
ligand	B3P, EDO, NO3	enzyme	Hydrolase E.C.3.1.3.86 BRENDA
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	Structural basis for interdomain communication in SHIP2 providing high phosphatase activity., Le Coq J, Camacho-Artacho M, Velazquez JV, Santiveri CM, Gallego LH, Campos-Olivas R, Dolker N, Lietha D, Elife. 2017 Aug 9;6. pii: e26640. doi: 10.7554/eLife.26640. PMID:28792888

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1180 Kb) [Save to disk] Biological Unit Coordinates (5okm.pdb1.gz) 153 Kb Biological Unit Coordinates (5okm.pdb2.gz) 155 Kb Biological Unit Coordinates (5okm.pdb3.gz) 152 Kb Biological Unit Coordinates (5okm.pdb4.gz) 155 Kb Biological Unit Coordinates (5okm.pdb5.gz) 154 Kb Biological Unit Coordinates (5okm.pdb6.gz) 152 Kb Biological Unit Coordinates (5okm.pdb7.gz) 152 Kb Biological Unit Coordinates (5okm.pdb8.gz) 151 Kb LPC: Ligand-Protein Contacts for 5OKM CSU: Contacts of Structural Units for 5OKM Structure Factors (8696 Kb) Retrieve 5OKM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5OKM from S2C, [Save to disk]

View 5OKM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5OKM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5okm_E] [5okm_A] [5okm_D] [5okm_B] [5okm_F] [5okm_G] [5okm_H] [5okm_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5OKM

Community annotation for 5OKM at PDBWiki (http://pdbwiki.org)

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