5OMC	Protein Binding	date	Jul 28, 2017
title	Crystal Structure Of K. Lactis Ddc2 N-Terminus In Complex Wi Cerevisiae Rfa1 (K45e Mutant) N-Ob Domain
authors	I.Deshpande, A.Seeber, K.Shimada, J.J.Keusch, H.Gut, S.M.Gasser
compound		source
Molecule: Replication Factor A Protein 1 Chain: A, B Fragment: Unp Residues 1-132 Synonym: Rf-A Protein 1,Dna-Binding Protein Buf2,Replicatio A 69 Kda Dna-Binding Subunit,Single-Stranded Dna-Binding Pr Engineered: Yes Mutation: Yes		Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Rfa1, Buf2, Rpa1, Yar007c, Fun3 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Popinf
Molecule: Dna Damage Checkpoint Protein Lcd1 Chain: C, D Engineered: Yes		Organism_scientific: Kluyveromyces Lactis Organism_common: Yeast Organism_taxid: 28985 Gene: Lcd1, Klla0c01892g Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Popinf
symmetry	Space Group: P 21 21 21	R_factor 0.201 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 34.420 94.590 170.840 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.38 Å
ligand	CL	enzyme
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	Structural Basis of Mec1-Ddc2-RPA Assembly and Activation on Single-Stranded DNA at Sites of Damage., Deshpande I, Seeber A, Shimada K, Keusch JJ, Gut H, Gasser SM, Mol Cell. 2017 Oct 19;68(2):431-445.e5. doi: 10.1016/j.molcel.2017.09.019. Epub, 2017 Oct 12. PMID:29033322

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk] Biological Unit Coordinates (5omc.pdb1.gz) 150 Kb LPC: Ligand-Protein Contacts for 5OMC CSU: Contacts of Structural Units for 5OMC Structure Factors (176 Kb) Retrieve 5OMC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5OMC from S2C, [Save to disk]

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5omc_C] [5omc_B] [5omc_D] [5omc_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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