5OSH Transport Protein date Aug 17, 2017
title Structure Of Retromer Vps29-Vps35c Subunits Complexed With R Terminal Domain (1-236)
authors M.Romano-Moreno, A.L.Rojas, M.Lucas, M.N.Isupov, A.Hierro
compound source
Molecule: Vacuolar Protein Sorting-Associated Protein 29
Chain: A, D, G, J
Synonym: Hvps29,Pep11 Homolog,Vesicle Protein Sorting 29
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vps29, Dc15, Dc7, Mds007
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Vacuolar Protein Sorting-Associated Protein 35
Chain: B, E, H, K
Synonym: Hvps35,Maternal-Embryonic 3,Vesicle Protein Sortin
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vps35, Mem3, Tcccta00141
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Interaptin
Chain: C, F, I, L
Engineered: Yes

Organism_scientific: Legionella Pneumophila Subsp. Pneumoph 43290;
Organism_taxid: 933093
Gene: Lp12_2303
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.254 R_Free 0.311
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.201 173.243 445.775 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A, J, D, G


H, K, E, B


Primary referenceMolecular mechanism for the subversion of the retromer coat by the Legionella effector RidL., Romano-Moreno M, Rojas AL, Williamson CD, Gershlick DC, Lucas M, Isupov MN, Bonifacino JS, Machner MP, Hierro A, Proc Natl Acad Sci U S A. 2017 Dec 11. pii: 1715361115. doi:, 10.1073/pnas.1715361115. PMID:29229824
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (463 Kb) [Save to disk]
  • Biological Unit Coordinates (5osh.pdb1.gz) 120 Kb
  • Biological Unit Coordinates (5osh.pdb2.gz) 119 Kb
  • Biological Unit Coordinates (5osh.pdb3.gz) 119 Kb
  • Biological Unit Coordinates (5osh.pdb4.gz) 117 Kb
  • CSU: Contacts of Structural Units for 5OSH
  • Structure Factors (1449 Kb)
  • Retrieve 5OSH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OSH from S2C, [Save to disk]
  • View 5OSH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OSH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5osh_E] [5osh_J] [5osh_B] [5osh_G] [5osh_H] [5osh_K] [5osh_L] [5osh_I] [5osh_C] [5osh_F] [5osh_D] [5osh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OSH
  • Community annotation for 5OSH at PDBWiki (http://pdbwiki.org)

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