5OSQ Cell Adhesion date Aug 18, 2017
title Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form II Processed In P21221)
authors L.Jovine, M.Monne
compound source
Molecule: Maltose-Binding Periplasmic Protein,Zona Pellucid Binding Protein 3;
Chain: A, B
Fragment: Unp Residues 27-393,Zp3 Zp-N Domain, Unp Residues
Synonym: Mbp,Mmbp,Maltodextrin-Binding Protein,Sperm Recept Pellucida Glycoprotein 3,Zp-3,Zona Pellucida Protein C;
Engineered: Yes
Mutation: Yes
Other_details: This Protein Is A Chimera. Residues 2-368 Ar Coli Maltose Binding Protein (Mbp), Correspond To Residues Swiss-Prot Database Entry P0aex9 And Contain Mutations I3t, K363a, D364a, R368n (Corresponding To I28t, E385a, K388a, D R393n In P0aex9). Residues 372-473 Are From Mouse Zp3 Prote Correspond To Residues 42-143 Of Swiss-Prot Database Entry
Organism_scientific: Escherichia Coli K-12, Mus Musculus
Organism_common: House Mouse
Organism_taxid: 83333, 10090
Cellular_location: Extracellular Matrix
Gene: Male, B4034, Jw3994, Zp3, Zp-3, Zpc
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Origami B
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pljmbp4c, Pljdis1
symmetry Space Group: P 21 2 21
R_factor 0.209 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.340 92.160 140.950 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand CA, GLC, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • carbohydrate transmembrane t...


  • Primary referenceCrystal structure of the ZP-N domain of ZP3 reveals the core fold of animal egg coats., Monne M, Han L, Schwend T, Burendahl S, Jovine L, Nature. 2008 Dec 4;456(7222):653-7. PMID:19052627
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (462 Kb) [Save to disk]
  • Biological Unit Coordinates (5osq.pdb1.gz) 230 Kb
  • Biological Unit Coordinates (5osq.pdb2.gz) 229 Kb
  • LPC: Ligand-Protein Contacts for 5OSQ
  • CSU: Contacts of Structural Units for 5OSQ
  • Structure Factors (671 Kb)
  • Retrieve 5OSQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OSQ from S2C, [Save to disk]
  • View 5OSQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OSQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5osq_B] [5osq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OSQ
  • Community annotation for 5OSQ at PDBWiki (http://pdbwiki.org)

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