5OYD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BGC, CL, GOL, NBG, SO4, XYS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIn vitro and in vivo characterization of three Cellvibrio japonicus glycoside hydrolase family 5 members reveals potent xyloglucan backbone-cleaving functions., Attia MA, Nelson CE, Offen WA, Jain N, Davies GJ, Gardner JG, Brumer H, Biotechnol Biofuels. 2018 Feb 17;11:45. doi: 10.1186/s13068-018-1039-6., eCollection 2018. PMID:29467823
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (5oyd.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (5oyd.pdb2.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 5OYD
  • CSU: Contacts of Structural Units for 5OYD
  • Structure Factors (452 Kb)
  • Retrieve 5OYD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OYD from S2C, [Save to disk]
  • View 5OYD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5oyd_A] [5oyd_B]
  • SWISS-PROT database:

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