5SWW	Hydrolase Dna	date	Aug 09, 2016
title	Crystal Structure Of Human Apobec3a Complexed With Ssdna
authors	K.Shi, S.Banerjee, K.Kurahashi, H.Aihara
compound		source
Molecule: Dna Dc->Du-Editing Enzyme Apobec-3a Chain: A, B, C, D Synonym: A3a,Phorbolin-1 Ec: 3.5.4.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Apobec3a Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna 15-Mer Chain: E, F, G, H Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: P 2 2 21	R_factor 0.210 R_Free 0.263
crystal cell	length a length b length c angle alpha angle beta angle gamma 90.148 90.199 167.257 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.15 Å
ligand	GOL, ZN	enzyme	Hydrolase E.C.3.5.4 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B cytidine deaminase activity
Primary reference	Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B., Shi K, Carpenter MA, Banerjee S, Shaban NM, Kurahashi K, Salamango DJ, McCann JL, Starrett GJ, Duffy JV, Demir O, Amaro RE, Harki DA, Harris RS, Aihara H, Nat Struct Mol Biol. 2016 Dec 19. doi: 10.1038/nsmb.3344. PMID:27991903

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (276 Kb) [Save to disk] Biological Unit Coordinates (5sww.pdb1.gz) 68 Kb Biological Unit Coordinates (5sww.pdb2.gz) 68 Kb Biological Unit Coordinates (5sww.pdb3.gz) 69 Kb Biological Unit Coordinates (5sww.pdb4.gz) 69 Kb LPC: Ligand-Protein Contacts for 5SWW CSU: Contacts of Structural Units for 5SWW Structure Factors (305 Kb) Retrieve 5SWW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5SWW from S2C, [Save to disk] Re-refined 5sww structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5SWW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5SWW

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5sww_F] [5sww_D] [5sww_A] [5sww_B] [5sww_G] [5sww] [5sww_C] [5sww_H] [5sww_E] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5SWW at PDBWiki (http://pdbwiki.org)

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