5T3P Hydrolase date Aug 26, 2016
title Crystal Structure Of Human Peroxisomal Coenzyme A Diphosphat
authors V.Srikannathasan, C.A.Nunez, C.Tallant, P.Siejka, S.Mathea, J.Kop J.M.Elkins, N.Burgess-Brown, C.H.Arrowsmith, A.M.Edwards, C.Bou F.Von Delft, K.Huber
compound source
Molecule: Peroxisomal Coenzyme A Diphosphatase Nudt7
Chain: A, B, C
Synonym: Nucleoside Diphosphate-Linked Moiety X Motif 7,Nud 7;
Ec: 3.6.1.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nudt7
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 31 2 1
R_factor 0.177 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.730 113.730 108.200 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.03 Å
ligand EDO enzyme Hydrolase E.C.3.6.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (232 Kb) [Save to disk]
  • Biological Unit Coordinates (5t3p.pdb1.gz) 226 Kb
  • LPC: Ligand-Protein Contacts for 5T3P
  • CSU: Contacts of Structural Units for 5T3P
  • Structure Factors (1061 Kb)
  • Retrieve 5T3P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T3P from S2C, [Save to disk]
    • View 5T3P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5T3P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t3p_A] [5t3p_B] [5t3p_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5T3P
  • Community annotation for 5T3P at PDBWiki (http://pdbwiki.org)

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