5T4T Hydrolase date Aug 30, 2016
title Crystal Structure Of The Fluoroacetate Dehalogenase Rpa1163 Asp110asn - Apo No Halide
authors P.Mehrabi, T.H.Kim, S.R.Prosser, E.F.Pai
compound source
Molecule: Fluoroacetate Dehalogenase
Chain: B, A
Ec: 3.8.1.3
Engineered: Yes
Organism_scientific: Rhodopseudomonas Palustris
Organism_taxid: 1076
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.167 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.880 78.850 85.130 90.00 103.71 90.00
method X-Ray Diffractionresolution 1.51 Å
ligand ACT enzyme Hydrolase E.C.3.8.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe role of dimer asymmetry and protomer dynamics in enzyme catalysis., Kim TH, Mehrabi P, Ren Z, Sljoka A, Ing C, Bezginov A, Ye L, Pomes R, Prosser RS, Pai EF, Science. 2017 Jan 20;355(6322). pii: eaag2355. doi: 10.1126/science.aag2355. PMID:28104837
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (5t4t.pdb1.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 5T4T
  • CSU: Contacts of Structural Units for 5T4T
  • Structure Factors (1471 Kb)
  • Retrieve 5T4T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T4T from S2C, [Save to disk]
  • Re-refined 5t4t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5T4T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5T4T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t4t_B] [5t4t_A] [5t4t]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5T4T
  • Community annotation for 5T4T at PDBWiki (http://pdbwiki.org)

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