5TBA	Transferase Dna	date	Sep 11, 2016
title	Postcatalytic Ternary Complex Of Human Dna Polymerase Beta W Dna Substrate, Incorporated (-)3tc And Ppi.
authors	R.Vyas, Z.Suo
compound		source
Molecule: Dna Polymerase Beta Chain: A Ec: 2.7.7.7,4.2.99.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Polb Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28b
Molecule: 5-Mer Phosphorylated Downstream Primer Chain: D Engineered: Yes Other_details: Synthetic Dna		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: 10-Mer Primer Chain: P Engineered: Yes Other_details: Synthetic Dna		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: 16-Mer Template Chain: T Engineered: Yes Other_details: Synthetic Dna		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 1 21 1	R_factor 0.205 R_Free 0.273
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.697 79.325 54.947 90.00 107.03 90.00
method	X-Ray Diffraction	resolution	2.49 Å
ligand	42E, NA, PPV	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural Insights into the Post-Chemistry Steps of Nucleotide Incorporation Catalyzed by a DNA Polymerase., Reed AJ, Vyas R, Raper AT, Suo Z, J Am Chem Soc. 2017 Jan 11;139(1):465-471. doi: 10.1021/jacs.6b11258. Epub 2016, Dec 27. PMID:27959534

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk] Biological Unit Coordinates (5tba.pdb1.gz) 68 Kb LPC: Ligand-Protein Contacts for 5TBA CSU: Contacts of Structural Units for 5TBA Structure Factors (262 Kb) Retrieve 5TBA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5TBA from S2C, [Save to disk] Re-refined 5tba structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5TBA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5TBA

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute Fold representative 5tba from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5tba_D] [5tba_A] [5tba] [5tba_T] [5tba_P] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5TBA

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