5TIB Lipid Binding Protein date Oct 01, 2016
title Gasdermin-B C-Terminal Domain Containing The Polymorphism Re Arg299:Ser306 Fused To Maltose Binding Protein
authors K.Chao, O.Herzberg
compound source
Molecule: Sugar Abc Transporter Substrate-Binding Protein,G B;
Chain: A, B
Synonym: Gasdermin-Like Protein
Engineered: Yes
Organism_scientific: Escherichia Coli, Homo Sapiens
Organism_common: Human
Organism_taxid: 562, 9606
Gene: Male, Oo96_18925, Gsdmb, Gsdml, Pp4052, Pro2521
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmalx(E)
symmetry Space Group: P 43 21 2
R_factor 0.184 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.060 104.060 252.210 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand ACT, MAL, NA enzyme
Gene OO96
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (173 Kb) [Save to disk]
  • Biological Unit Coordinates (5tib.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (5tib.pdb2.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 5TIB
  • CSU: Contacts of Structural Units for 5TIB
  • Structure Factors (916 Kb)
  • Retrieve 5TIB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TIB from S2C, [Save to disk]
  • Re-refined 5tib structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TIB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TIB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5tib from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tib] [5tib_B] [5tib_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TIB
  • Community annotation for 5TIB at PDBWiki (http://pdbwiki.org)

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