5TJ2 Lipid Binding Protein date Oct 03, 2016
title Gasdermin-B C-Terminal Domain Containing The Polymorphism Re Gly299:Ser306 Fused To Maltose Binding Protein
authors L.K.Chao, O.Herzberg
compound source
Molecule: Sugar Abc Transporter Substrate-Binding Protein,G Fusion Protein;
Chain: A, B, C, D
Synonym: Gasdermin-Like Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli, Homo Sapiens
Organism_common: Human
Organism_taxid: 562, 9606
Gene: Male, Oo96_18925, Gsdmb, Gsdml, Pp4052, Pro2521
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Plasmid
symmetry Space Group: C 2 2 21
R_factor 0.213 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
144.039 152.750 255.770 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand MAL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (331 Kb) [Save to disk]
  • Biological Unit Coordinates (5tj2.pdb1.gz) 86 Kb
  • Biological Unit Coordinates (5tj2.pdb2.gz) 87 Kb
  • Biological Unit Coordinates (5tj2.pdb3.gz) 83 Kb
  • Biological Unit Coordinates (5tj2.pdb4.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 5TJ2
  • CSU: Contacts of Structural Units for 5TJ2
  • Structure Factors (2067 Kb)
  • Retrieve 5TJ2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TJ2 from S2C, [Save to disk]
  • Re-refined 5tj2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TJ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TJ2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5tj2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tj2_C] [5tj2] [5tj2_A] [5tj2_D] [5tj2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TJ2
  • Community annotation for 5TJ2 at PDBWiki (http://pdbwiki.org)

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