5TQW Transferase date Oct 24, 2016
title Cryoem Reconstruction Of Human Ikk1, Open Conformation 1
authors D.Lyumkis, G.Ghosh, S.Polley, T.Biswath, D.Huang, D.O.Passos
compound source
Molecule: Inhibitor Of Nuclear Factor Kappa-B Kinase Subuni
Chain: A, B
Synonym: Ikappab Kinase, Conserved Helix-Loop-Helix Ubiquit Kinase, I-Kappa-B Kinase 1, Ikk1, Nuclear Factor Nf-Kappa-B Kinase Alpha, Nfkbika, Transcription Factor 16, Tcf-16;
Ec: 2.7.11.10
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Chuk, Ikka, Tcf16
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfastbachta
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 5.60 Å
ligand
enzyme Transferase E.C.2.7.11.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Basis for the Activation of IKK1/alpha., Polley S, Passos DO, Huang DB, Mulero MC, Mazumder A, Biswas T, Verma IM, Lyumkis D, Ghosh G, Cell Rep. 2016 Nov 15;17(8):1907-1914. doi: 10.1016/j.celrep.2016.10.067. PMID:27851956
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (5tqw.pdb1.gz) 164 Kb
  • CSU: Contacts of Structural Units for 5TQW
  • Retrieve 5TQW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TQW from S2C, [Save to disk]
  • View 5TQW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TQW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tqw_B] [5tqw_A] [5tqw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5TQW: [STYKc ] by SMART
  • Other resources with information on 5TQW
  • Community annotation for 5TQW at PDBWiki (http://pdbwiki.org)

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