5TXM Transferase Dna date Nov 17, 2016
title Structure Of Hiv-1 Reverse Transcriptase (Rt) Ternary Comple Double Stranded Dna And An Incoming Ddatp
authors K.Das, S.M.Martinez, E.Arnold
compound source
Molecule: Hiv-1 Reverse Transcriptase P66 Subunit
Chain: A, C
Synonym: Pr160gag-Pol
Ec: 2.7.7.49
Engineered: Yes
Mutation: Yes
 Organism_scientific: Human Immunodeficiency Virus Type 1 Gr Subtype B (Isolate Bh10);
Organism_common: Hiv-1
Organism_taxid: 11678
Strain: Isolate Bh10
Gene: Gag-Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Hiv-1 Reverse Transcriptase P51 Subunit
Chain: B, D
Synonym: Pr160gag-Pol
Ec: 2.7.7.7
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus Type 1 Gr Subtype B (Isolate Bh10);
Organism_common: Hiv-1
Organism_taxid: 11678
Strain: Isolate Bh10
Gene: Gag-Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Tpgpgptpcpgpgpcpgpcpcpcpgpapapcpapgpgp Tpg)-3');
Chain: T, E
Engineered: Yes
Synthetic: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676

Molecule: Dna (5'-D(Cpapgptpcpcpcptpgptptpcpgp Pcpgpcpcpg)-3');
Chain: P, F
Engineered: Yes
Synthetic: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
symmetry Space Group: P 1 21 1
R_factor 0.184 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.337 133.946 139.399 90.00 97.71 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand DDS, EDO, FRU, GLC, MG, MRG, SO4 enzyme Transferase E.C.2.7.7.49 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceStructural Insights into HIV Reverse Transcriptase Mutations Q151M and Q151M Complex that Confer Multi-Nucleoside Drug Resistance., Das K, Martinez SE, Arnold E, Antimicrob Agents Chemother. 2017 Apr 10. pii: AAC.00224-17. doi:, 10.1128/AAC.00224-17. PMID:28396546
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (753 Kb) [Save to disk]
  • Biological Unit Coordinates (5txm.pdb1.gz) 373 Kb
  • Biological Unit Coordinates (5txm.pdb2.gz) 375 Kb
  • LPC: Ligand-Protein Contacts for 5TXM
  • CSU: Contacts of Structural Units for 5TXM
  • Structure Factors (1387 Kb)
  • Retrieve 5TXM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TXM from S2C, [Save to disk]
  • Re-refined 5txm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TXM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TXM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5txm_F] [5txm_P] [5txm_D] [5txm_B] [5txm_T] [5txm_E] [5txm_C] [5txm_A] [5txm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TXM
  • Community annotation for 5TXM at PDBWiki (http://pdbwiki.org)

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