5U2P Transport Protein date Nov 30, 2016
title The Crystal Structure Of Tp0737 From Treponema Pallidum
authors C.A.Brautigam, R.K.Deka, D.R.Tomchick, M.V.Norgard
compound source
Molecule: Sugar Abc Transporter Substrate-Binding Protein
Chain: A
Fragment: Residues 28-436
Engineered: Yes
 Organism_scientific: Treponema Pallidum Subsp. Pallidum
Organism_common: Syphilis Treponeme
Organism_taxid: 161
Gene: A8p32_03680
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.181 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.925 55.925 237.632 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.76 Å
ligand BR, CL, EDO enzyme
Gene A8P32
Primary referenceFunctional clues from the crystal structure of an orphan periplasmic ligand-binding protein from Treponema pallidum., Brautigam CA, Deka RK, Liu WZ, Tomchick DR, Norgard MV, Protein Sci. 2017 Feb 7. doi: 10.1002/pro.3133. PMID:28168761
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (5u2p.pdb1.gz) 188 Kb
  • LPC: Ligand-Protein Contacts for 5U2P
  • CSU: Contacts of Structural Units for 5U2P
  • Structure Factors (760 Kb)
  • Retrieve 5U2P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5U2P from S2C, [Save to disk]
  • Re-refined 5u2p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5U2P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5U2P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5u2p] [5u2p_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5U2P
  • Community annotation for 5U2P at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science