5U6C Transferase Transferase Inhibitor date Dec 07, 2016
title Crystal Structure Of The Mer Kinase Domain In Complex With A Macrocyclic Inhibitor
authors K.S.Gajiwala, R.A.Ferre
compound source
Molecule: Tyrosine-Protein Kinase Mer
Chain: A, B
Fragment: Unp Residues 570-864
Synonym: Proto-Oncogene C-Mer,Receptor Tyrosine Kinase Mert
Ec: 2.7.10.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mertk, Mer
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 1 21 1
R_factor 0.211 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.692 92.330 69.269 90.00 100.80 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 7YS enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe Axl Kinase Domain in Complex with a Macrocyclic Inhibitor Offers First Structural Insights into an Active TAM Receptor Kinase., Gajiwala KS, Grodsky N, Bolanos B, Feng J, Ferre R, Timofeevski S, Xu M, Murray BW, Johnson TW, Stewart A, J Biol Chem. 2017 Jul 19. pii: jbc.M116.771485. doi: 10.1074/jbc.M116.771485. PMID:28724631
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (5u6c.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 5U6C
  • CSU: Contacts of Structural Units for 5U6C
  • Structure Factors (319 Kb)
  • Retrieve 5U6C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5U6C from S2C, [Save to disk]
  • Re-refined 5u6c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5U6C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5U6C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5u6c_A] [5u6c_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5U6C
  • Community annotation for 5U6C at PDBWiki (http://pdbwiki.org)

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