5U7Q	Transferase	date	Dec 12, 2016
title	Identification Of A New Class Of Potent Cdc7 Inhibitors Desi Putative Pharmacophore Model: Synthesis And Biological Eval 2,3-Dihydrothieno[3,2-D]Pyrimidin-4(1h)-Ones
authors	I.D.Hoffman
compound		source
Molecule: Rho-Associated Protein Kinase 2 Chain: A, B, C, D Fragment: Unp Residues 23-417 Synonym: Rho Kinase 2,Rho-Associated,Coiled-Coil-Containing Kinase 2,Coiled-Coil-Containing Protein Kinase II,Rock-II,P 2; Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rock2, Kiaa0619 Expression_system: Baculovirus Expression Vector Pfastbac1- Expression_system_taxid: 274590 Expression_system_strain: Sf9 Expression_system_vector_type: Pfastbachtb
symmetry	Space Group: P 1 21 1	R_factor 0.205 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 91.194 146.463 112.416 90.00 96.34 90.00
method	X-Ray Diffraction	resolution	3.15 Å
ligand		enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Identification of a new class of potent Cdc7 inhibitors designed by putative pharmacophore model: Synthesis and biological evaluation of 2,3-dihydrothieno[3,2-d]pyrimidin-4(1H)-ones., Kurasawa O, Oguro Y, Miyazaki T, Homma M, Mori K, Iwai K, Hara H, Skene R, Hoffman I, Ohashi A, Yoshida S, Ishikawa T, Cho N, Bioorg Med Chem. 2017 Apr 1;25(7):2133-2147. doi: 10.1016/j.bmc.2017.02.021. Epub, 2017 Feb 16. PMID:28284870

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (525 Kb) [Save to disk] Biological Unit Coordinates (5u7q.pdb1.gz) 133 Kb Biological Unit Coordinates (5u7q.pdb2.gz) 132 Kb Biological Unit Coordinates (5u7q.pdb3.gz) 133 Kb Biological Unit Coordinates (5u7q.pdb4.gz) 131 Kb Biological Unit Coordinates (5u7q.pdb5.gz) 262 Kb Biological Unit Coordinates (5u7q.pdb6.gz) 261 Kb CSU: Contacts of Structural Units for 5U7Q Structure Factors (1526 Kb) Retrieve 5U7Q in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5U7Q from S2C, [Save to disk] Re-refined 5u7q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5U7Q

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5u7q] [5u7q_C] [5u7q_B] [5u7q_D] [5u7q_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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