5UDC	Viral Protein Immune System	date	Dec 26, 2016
title	Crystal Structure Of Rsv F A2 Bound To Medi8897
authors	J.S.Mclellan
compound		source
Molecule: Medi8897 Fab Heavy Chain Chain: H, B, E Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: 293f
Molecule: Medi8897 Fab Light Chain Chain: L, C, G Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: 293f
Molecule: Fusion Glycoprotein F0 Chain: F, A, D Synonym: Protein F Engineered: Yes Mutation: Yes		Organism_scientific: Human Respiratory Syncytial Virus A (S A2); Organism_taxid: 11259 Strain: A2 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell: 293f Expression_system_vector_type: Plasmid Expression_system_plasmid: Pah
symmetry	Space Group: P 1 21 1	R_factor 0.175 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 103.780 126.310 162.310 90.00 102.56 90.00
method	X-Ray Diffraction	resolution	3.45 Å
ligand	BMA, CL, MAN, NAG	enzyme
Gene Ontology	Chain Function Process Component F, A, D
Primary reference	A highly potent extended half-life antibody as a potential RSV vaccine surrogate for all infants., Zhu Q, McLellan JS, Kallewaard NL, Ulbrandt ND, Palaszynski S, Zhang J, Moldt B, Khan A, Svabek C, McAuliffe JM, Wrapp D, Patel NK, Cook KE, Richter BWM, Ryan PC, Yuan AQ, Suzich JA, Sci Transl Med. 2017 May 3;9(388). pii: eaaj1928. doi:, 10.1126/scitranslmed.aaj1928. PMID:28469033

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (886 Kb) [Save to disk] Biological Unit Coordinates (5udc.pdb1.gz) 871 Kb LPC: Ligand-Protein Contacts for 5UDC CSU: Contacts of Structural Units for 5UDC Structure Factors (2458 Kb) Retrieve 5UDC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5UDC from S2C, [Save to disk] Re-refined 5udc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5UDC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5UDC

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5udc_G] [5udc_L] [5udc_H] [5udc_B] [5udc] [5udc_D] [5udc_C] [5udc_E] [5udc_F] [5udc_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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