5UGZ Hydrolase date Jan 10, 2017
title Crystal Structure Of Clbq From The Colibactin Nrpspks Pathw
authors N.S.Guntaka, S.D.Bruner
compound source
Molecule: Putative Thioesterase
Chain: A, B
Synonym: Thioesterase
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Clbq
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 1 21 1
R_factor 0.151 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.971 94.994 68.444 90.00 109.18 90.00
method X-Ray Diffractionresolution 1.98 Å
ligand BME enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure and Functional Analysis of ClbQ, an Unusual Intermediate-Releasing Thioesterase from the Colibactin Biosynthetic Pathway., Guntaka NS, Healy AR, Crawford JM, Herzon SB, Bruner SD, ACS Chem Biol. 2017 Sep 8. doi: 10.1021/acschembio.7b00479. PMID:28846367
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (5ugz.pdb1.gz) 42 Kb
  • Biological Unit Coordinates (5ugz.pdb2.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 5UGZ
  • CSU: Contacts of Structural Units for 5UGZ
  • Structure Factors (864 Kb)
  • Retrieve 5UGZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UGZ from S2C, [Save to disk]
    • View 5UGZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5UGZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ugz_A] [5ugz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5UGZ
  • Community annotation for 5UGZ at PDBWiki (http://pdbwiki.org)

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