5UHD Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 4nt RNA in complex with Rifampin date
authors Lin, W., Das, K., Feng, Y., Ebright, R.H.
compound source
R_Free 0.2644
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 4.01
ligand MG, RFP, ZN enzyme
A, B




  • bacterial sigma factor activ...

  • Primary referenceStructural Basis of Mycobacterium tuberculosis Transcription and Transcription Inhibition., Lin W, Mandal S, Degen D, Liu Y, Ebright YW, Li S, Feng Y, Zhang Y, Mandal S, Jiang Y, Liu S, Gigliotti M, Talaue M, Connell N, Das K, Arnold E, Ebright RH, Mol Cell. 2017 Apr 20;66(2):169-179.e8. doi: 10.1016/j.molcel.2017.03.001. Epub, 2017 Apr 6. PMID:28392175
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (543 Kb) [Save to disk]
  • Biological Unit Coordinates (5uhd.pdb1.gz) 533 Kb
  • LPC: Ligand-Protein Contacts for 5UHD
  • CSU: Contacts of Structural Units for 5UHD
  • Structure Factors (282 Kb)
  • Retrieve 5UHD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UHD from S2C, [Save to disk]
  • Re-refined 5uhd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UHD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UHD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uhd] [5uhd_G] [5uhd_B] [5uhd_D] [5uhd_H] [5uhd_F] [5uhd_E] [5uhd_A] [5uhd_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UHD
  • Community annotation for 5UHD at PDBWiki (http://pdbwiki.org)

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