5UI5 Transcription Dna date Jan 12, 2017
title Crystal Structure Of Aquifex Aeolicus Sigman Bound To Promot
authors S.A.Darst, E.A.Campbell, K.Rajashankar
compound source
Molecule: Dna (31-Mer)
Chain: A, N
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Aquifex Aeolicus
Organism_taxid: 63363

Molecule: Dna (30-Mer)
Chain: B, O
Engineered: Yes
Synthetic: Yes
Organism_scientific: Aquifex Aeolicus
Organism_taxid: 63363

Molecule: Rna Polymerase Sigma Factor Rpon
Chain: I, V
Fragment: Unp Residues 61-398
Engineered: Yes
Organism_scientific: Aquifex Aeolicus (Strain Vf5)
Organism_taxid: 224324
Strain: Vf5
Gene: Rpon, Aq_599
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 32
R_factor 0.289 R_Free 0.336
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.921 99.921 123.300 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.40 Å
Gene AQ
Gene
Ontology
ChainFunctionProcessComponent
I, V


Primary referenceCrystal structure of Aquifex aeolicus sigmaN bound to promoter DNA and the structure of sigmaN-holoenzyme., Campbell EA, Kamath S, Rajashankar KR, Wu M, Darst SA, Proc Natl Acad Sci U S A. 2017 Feb 21. pii: 201619464. doi:, 10.1073/pnas.1619464114. PMID:28223493
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk]
  • Biological Unit Coordinates (5ui5.pdb1.gz) 77 Kb
  • Biological Unit Coordinates (5ui5.pdb2.gz) 78 Kb
  • CSU: Contacts of Structural Units for 5UI5
  • Structure Factors (514 Kb)
  • Retrieve 5UI5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UI5 from S2C, [Save to disk]
  • Re-refined 5ui5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5UI5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5UI5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ui5_I] [5ui5_V] [5ui5_N] [5ui5] [5ui5_O] [5ui5_B] [5ui5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5UI5
  • Community annotation for 5UI5 at PDBWiki (http://pdbwiki.org)

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