5UJ7 Dna Binding Protein date Jan 17, 2017
title Structure Of The Active Form Of Human Origin Recognition Com Atpase Motor Module, Complex Subunits 1, 4, 5
authors A.Tocilj, E.Elkayam, K.F.On, L.Joshua-Tor
compound source
Molecule: Origin Recognition Complex Subunit 1
Chain: A, B
Synonym: Replication Control Protein 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Orc1, Orc1l, Parc1
Expression_system: Spodoptera Aff. Frugiperda 2 Rz-2014
Expression_system_taxid: 1491790

Molecule: Origin Recognition Complex Subunit 4
Chain: C, D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Orc4, Orc4l
Expression_system: Spodoptera Aff. Frugiperda 2 Rz-2014
Expression_system_taxid: 1491790

Molecule: Origin Recognition Complex Subunit 5
Chain: E, F
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Orc5, Orc5l
Expression_system: Spodoptera Aff. Frugiperda 2 Rz-2014
Expression_system_taxid: 1491790
symmetry Space Group: P 1 21 1
R_factor 0.242 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.887 81.141 151.947 90.00 97.25 90.00
method X-Ray Diffractionresolution 3.39 Å
ligand ATP, K, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


F, E


Primary referenceStructure of the active form of human origin recognition complex and its ATPase motor module., Tocilj A, On KF, Yuan Z, Sun J, Elkayam E, Li H, Stillman B, Joshua-Tor L, Elife. 2017 Jan 23;6. pii: e20818. doi: 10.7554/eLife.20818. PMID:28112645
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (683 Kb) [Save to disk]
  • Biological Unit Coordinates (5uj7.pdb1.gz) 341 Kb
  • Biological Unit Coordinates (5uj7.pdb2.gz) 336 Kb
  • LPC: Ligand-Protein Contacts for 5UJ7
  • CSU: Contacts of Structural Units for 5UJ7
  • Structure Factors (883 Kb)
  • Retrieve 5UJ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UJ7 from S2C, [Save to disk]
  • Re-refined 5uj7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UJ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UJ7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uj7_B] [5uj7] [5uj7_D] [5uj7_C] [5uj7_F] [5uj7_E] [5uj7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UJ7
  • Community annotation for 5UJ7 at PDBWiki (http://pdbwiki.org)

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