5UPL Transferase date Feb 03, 2017
title Cdc42 Binds Pak4 Via An Extended Gtpase-Effector Inteface - Pak4fl, Cdc42 - Unrefined
authors B.H.Ha, T.J.Boggon
compound source
Molecule: Serinethreonine-Protein Kinase Pak 4
Chain: A
Fragment: Unp Residues 2-426
Synonym: P21-Activated Kinase 4,Pak-4
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Other_details: Ser474 Is Phosphorylated (Sep)
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Variant: Isoform2
Gene: Pak4, Kiaa1142
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Rilp
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet28a

Molecule: Cell Division Control Protein 42 Homolog
Chain: B
Fragment: Unp Residues 1-177
Synonym: G25k Gtp-Binding Protein
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdc42
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Rilp
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: P 63
R_factor 0.257 R_Free 0.310
crystal
cell
length a length b length c angle alpha angle beta angle gamma
141.652 141.652 62.093 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand SEP enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • ubiquitin protein ligase act...


  • Primary referenceCDC42 binds PAK4 via an extended GTPase-effector interface., Ha BH, Boggon TJ, Proc Natl Acad Sci U S A. 2018 Jan 2. pii: 1717437115. doi:, 10.1073/pnas.1717437115. PMID:29295922
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (5upl.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 5UPL
  • CSU: Contacts of Structural Units for 5UPL
  • Structure Factors (377 Kb)
  • Retrieve 5UPL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UPL from S2C, [Save to disk]
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  • Visual 3D analysis of 5UPL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5upl_A] [5upl_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UPL
  • Community annotation for 5UPL at PDBWiki (http://pdbwiki.org)

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